species:   Clros
pid:       PID1836
parent:    cro-mir-2
paralog:   
locus:     CADEHS020000002.2:2259334-2259412
matures:   ['UAGAAUUCGGGGUAGAAUG', '']
srr:       ERR5950923
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram CADEHS020000002.2:2259334-2259412

4504 out of bounds
4439 alignments
4376 proper strand
4348 stranded perfect matches

****************                                          *********************
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUCCUAACAUUCACAUUGCCGCCAUAGAAUUCGGGGUAGAAUG
(((((((((((((((((((((((............................))))))))))))))))))))))).....
------------------------------------------------------------UAGAAUUCGGGGUAGAAUG l=19 a=3713 c
------------------------------------------------------------------------------- l=0 a=0 c*
------------------------------------------------------------UAGAAUUCGGGGUAGAAUG l=19 a=3713 ma
------------------------------------------------------------------------------- l=0 a=0 ma*

-----------------------------------------------------------------UUCGGGGUAGAAU- l=13 a=1 
-----------------------------------------------------------------UUCGGGGUAGAAUG l=14 a=1 
----------------------------------------------------------------AUUCGGGGUAGAAU- l=14 a=1 
----------------------------------------------------------------AUUCGGGGUAGAAUG l=15 a=1 
--------------------------------------------------------------GAAUUCGGGGUAGAAU- l=16 a=2 
-------------------------------------------------------------AGAAUUCGGGGUAGAAU- l=17 a=4 
-------------------------------------------------------------AGAAUUCGGGGUAGAAUG l=18 a=3 
------------------------------------------------------------UAGAAUUCGGGGU------ l=13 a=2 
------------------------------------------------------------UAGAAUUCGGGGUA----- l=14 a=27 
------------------------------------------------------------UAGAAUUCGGGGUAG---- l=15 a=3 
------------------------------------------------------------UAGAAUUCGGGGUAGA--- l=16 a=8 
------------------------------------------------------------UAGAAUUCGGGGUAGAA-- l=17 a=28 
------------------------------------------------------------UAGAAUUCGGGGUAGAAU- l=18 a=489 
------------------------------------------------------------UAGAAUUCGGGGUAGAAa- l=18 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAg- l=18 a=1 
------------------------------------------------------------UAGAAUaCGGGGUAGAAU- l=18 a=1 
------------------------------------------------------------UAGAgUUCGGGGUAGAAU- l=18 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAc- l=18 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAUG l=19 a=3713 (c,ma)
------------------------------------------------------------UAGAAUaCGGGGUAGAAUG l=19 a=1 
------------------------------------------------------------UAGAAUUnGGGGUAGAAUG l=19 a=1 
------------------------------------------------------------UAGAAUUCaGGGUAGAAUG l=19 a=2 
------------------------------------------------------------UAGAAUUCGGGGaAGAAUG l=19 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAcAAUG l=19 a=1 
------------------------------------------------------------aAGAAUUCGGGGUAGAAUG l=19 a=2 
------------------------------------------------------------UAGAAUUCGGGGUAGAgUG l=19 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAcG l=19 a=1 
------------------------------------------------------------cAGAAUUCGGGGUAGAAUG l=19 a=1 
------------------------------------------------------------UAGAAcUCGGGGUAGAAUG l=19 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAaG l=19 a=2 
------------------------------------------------------------UAGAAaUCGGGGUAGAAUG l=19 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAAUc l=19 a=3 
------------------------------------------------------------UAGAgUUCGGGGUAGAAUG l=19 a=1 
------------------------------------------------------------UgGAAUUCGGGGUAGAAUG l=19 a=2 
-----------------------------------------------------------AUAGAAUUCGGGGUAGAAU- l=19 a=4 
---------------------------------------------------------CCAUAGAAUUCGGGGUAGAc-- l=20 a=1 
--------------------------------------------------------GCCAUAGAAUUCGGGGU------ l=17 a=1 
-------------------------------------------------CAUUGCCGCCAUAGAAUUCGGa-------- l=22 a=1 
---------------------------CCUGCCGCGAU----------------------------------------- l=11 a=1 
---------------------------CCUGCCGCGAUC---------------------------------------- l=12 a=23 
----------------GCGGCAACUAACCUGCCGCGAUCCUAACAUUCACAUUGCCGCCA------------------- l=44 a=13 
---------UUCUAUGGCGGCAAC------------------------------------------------------- l=15 a=1 
---------UUCUAUGGCGGCAACUAACC-------------------------------------------------- l=20 a=1 
----CCGAAUUCUAUG--------------------------------------------------------------- l=12 a=2 
----CCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUCCU-------------------------------------- l=37 a=1 
UACCCCGAAUUCUAUGGC------------------------------------------------------------- l=18 a=1 
UACCCCGAAUUCUAUGGCGG----------------------------------------------------------- l=20 a=1 
UACCCCGAAUUCUAUGGCGGC---------------------------------------------------------- l=21 a=1 
UACCCCGAAUUCUAUGGCGGCAACUAACCUG------------------------------------------------ l=31 a=3 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGC-------------------------------------------- l=35 a=1 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUCC--------------------------------------- l=40 a=2 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUCCU-------------------------------------- l=41 a=2 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUCCUAA------------------------------------ l=43 a=1 
UACCCCGAAUUCUAUGGCGGCAACUAACCUGCCGCGAUCCUAACAUUCACA---------------------------- l=51 a=6 

mb-00110
ax-0011100
ku-11
ss-101011111010
fn-111
